you sure you got the plug wires right? They are, at the coil pack:
5 1
6 2
4 3
And at the engine:
1 2 3
4 5 6
NOTE THAT 5 AND 6 ON THE COIL PACK ARE REVERSED!
Why Ford did this, nobody will ever know (yeah, I know somebody knows), but I know the Chilton's manual has this wrong. So if you used that, then it just won't work right.
Edit: Also, if you unplugged the cam sensor, did you make sure to plug it back in?
Also: Make sure all the grounds are hooked up. The one big strap that hooks up to the back left intake bracket (looking from the front of the car) is one that a lot of people forget. Also, is the ground wire to the negative battery terminal in good shape?