That's why it is best to try one remediation at a time. Now you have little idea either what would have fixed it or what has caused the new symptom. At least three of the six+ things can be restored to the old equipment.
Injector timing requires the PCM to open them. If it doesn't know about crank sensor, you'd get neither spark nor squirt.
The first - verify the letter code of the replacement CCRM and the model of PCM. They are not interchangeable.
Verify the timing as you'd have pulled the belt. Top two cam marks line up at the top when bottom pulley indicates 0.