I had 3.99 gears put in the tranny while it was out to have the TC and tranny rebuilt. I got a chip from FordChip which was flashed for the gear change but have not put it in. So far with about 50 miles of driving there are no issues from the PCM about the gear change.
The OEM gears are 3.79. Parts are under $100.
The OEM gears are 3.79. Parts are under $100.