I shared that DA info to Ryan because I think it absolutely matters here.
Finally had time to dig into the WOT log a little more and guys, these screenshots are actually really informative.



at around 4,954 RPM in 3rd gear, the big thing that jumps out is pedal state showed WOT, but throttle was only around 40 percent. Throttle angle was around 36 degrees and desired throttle angle matched. That means the PCM was not losing control or getting confused. It wanted that throttle angle.
Desired load was 1.43 and actual load was 1.435. That is huge. The PCM achieved the load target almost perfectly. In other words, the car was not struggling to make load. The PCM got exactly what it wanted and then controlled the throttle to maintain it.
That is not a car falling on its face. That is an actively managed car.
Then looking at torque, scheduled torque was around 435 lb ft, desired brake torque was around 369 lb ft and ETC torque request was around 369 lb ft. That looks like classic torque management logic. Driver demand says WOT, but the torque model says this is the allowed target right now, so the PCM shapes the throttle to hit that target.
Even better, knock was basically zero, wastegate duty cycle was basically zero, boost was only around 10 psi max and the car was already moving enough air to hit the modeled target. That supports the theory that this is not a turbo problem, not a fuel problem and not a mechanical unhappy problem. It looks like a clean modeled torque/load intervention.
Then at the tail end of the delayed 2-3 shift around 6400 RPM, the same pattern shows up again. Pedal state still showed WOT, throttle was still only around 40 percent, boost was actually down closer to around 8 psi, wastegate duty cycle was still basically zero, knock was still basically nothing and desired load again matched actual load almost perfectly.

That is the part that makes me think the PCM was in complete control the entire time. Desired load and actual load matching that closely is a giant clue. It was not confused. It was not chasing its tail. It was commanding a limit and the engine was obeying.
The hang at 6400 RPM looks less like the car falling apart and more like the PCM heavily managing torque while the shift logic was not immediately completing the 2-3 shift. Almost like the system was holding the car in a controlled torque-managed state until the shift finally agreed to happen. When I breathed the throttle slightly, it finally caught the next gear and I rolled back into it.
The wild part is this was all happening in dense cool Vermont air, near sea level, on an infant conservative base map, with corrected MAP scaling, stable voltage, cleaned up dead system DTC logic and a BOV that is actually working now.
So my current read is pretty simple.
This was not chaos. This was not the car randomly falling over.
This was the PCM saying nope, we are protecting the torque model and drivetrain, while the car was already hitting load targets very efficiently at basically wastegate spring pressure.