IIRC, one way that SS got the PBR caliper to fit under the slicer was by grinding generous amounts of material off the top. Not what I'd call a very elegant mod, but, whatever.
I don't know whether there are differences between the SS 12.5" kit and the Baer 12.5", so I don't know whether the rotors are compatible or not.
Todd can supply the hat and the iron rotor to make two-piece rotors for the 12.5" kit. The rotors can be ordered directly from Coleman if you know the dimensions, but if you get the hats from Todd there's not much reason to not get the rotors from him as well.
And to the OP's original point on the hats, Todd's hats are really pretty impressive. I'd be surprised if he doesn't have something that would work for the 96 rotors as well. I need to pull the 12" rotors off the Pumpkin and get two-piece sets for that as well, and I just need to make sure that the hats clear the inside bracket. That'd be the only worry, I'd think.