Thanks everyone for all the replies. I'm the OP's dad who has been working with him with this. He's 16, this is his first car and this is our first Taurus SHO. It's been a learning experience so far in the short time we've had it. I give him a lot of credit for making an account here and reaching out to you all for pointers and help. I didn't expect I would be working with him on partial engine disassembly for his first car a few months in. It was supposed to be oil changes and plugs as needed.
I have a Foxwell scan tool and have some data stored from some of our scans. We're going to pick up a scope for the cylinder and a compression testing kit for additional tests. I want to say from memory the high pressure fuel desired and actual were close to the same values and one of the banks had a different long term fuel trim value that coincided with the misfiring bank.
We'll look into a few more things and report back. Really hoping it's not a head gasket as I have the service manual and opening it up that much is going to suck considering how much teardown we will need to do.
Maint History
Someone asked about maintenance history, we did get that when we bought it and it was running great up to a week ago. I'll summarize what we know has been done.
It appears to have regular oil and filter change records along the way but here are some of the other items.
06/2015 55k miles - new plugs, trans fluid flushed.
12/2015 59k miles - antifreeze/coolant flushed/changed, thermostat housing/gasket replaced
04/2016 63k miles - new plugs
08/2017 79k miles - new plugs
07/2020 108k miles - new plugs
06/2023 122k miles - A/C recharge, New Alternator, rear shock absorbers
03/2024 -~123k miles - Differential Fluid Flushed/changed, rear diff serviced, trans fluid flushed, valve cover gaskets replaced.
04/2025 140k miles - (This is when we bought it) Oil and Filter, O2 sensor replaced, rear diff pinion seal replaced, new plugs.
We haven't owned it long, it has a K&N Air Raid filter and open top box, Magnaflow exhaust but no idea if there was any attempts at a tune in the past.
Recent history and what we've tried/done so far.
This isn't the first misfire issue, but they were appearing on the other bank and it was sporadic and those went away. We've swapped COP's around but haven't replaced them. On the right side we found some oil around the plug well at the seal on Cyl 1 and 3. We replaced the valve cover gasket and installed new seals as well as new boots and seals for the COP's all around. It's got new plugs now all around. Originally we removed the intake manifold to get to the injectors and when we removed it we found what appeared to be bad gaskets on the coolant channels. When it was removed we also noted liquid in with cylinder 3's valve which I had assumed was from a bad gasket on the intake manifold. Those were cleaned out with the valves fully closed and dry when we reassembled.
No leaks under the car that we have ever noticed and the coolant looked clean/normal when we drained it for the intake manifold. We also changed the oil after the recent repairs and it appeared normal with no signs of coolant mixed in. Inspected the wiring harness connector for cyl 3's coil and didn't see any wear or obvious wire issues.
So, we'll get a compression test and try and scope the cylinder for more info and try and narrow it down from here. The foxwell scanner is pretty new for me and I understand what most of the values are but the tips about checking long term fuel trim give us something to report back.
On the scans it shows the acceleration value of each cylinder and 1, 2, 4, 5, and 6 all have values around 0 that fluctuates, Cyl 3 fluctuates around -1 to -2. I am not sure what that's indicative of and haven't found a good breakdown or explanation.