stevetatro:
From what I've heard, that's simply a design flaw, and most '93 ATX's have a hard 1-2 shift. I know mine did.
The cure (at least partial) is to, when you have it rebuilt, make sure the shop rebuilds it to the latest specs, meaning there have been improvements in the design (even past the '95 ATX) that help alleviate the hard 1-2 shifts.
Also, I'd suggest having any rebuilds done by shops that will install aftermarket shift kits (Transgo or otherwise). You'll be much happier with the crisp shifting and the rebuilt tranny should last much longer.
Oh, and if you're still running with the original H3Z (or H3Z2) computer, you could try buying/swapping with a D4U1 computer from a '94 or '95 ATX SHO. I've heard those help firm up the shifts and reduce some of the "slop" that's inherent to Ford ATX's. I've got my D4U1 sitting at home, just haven't plugged it in yet.
Good luck.