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How much of a surge was it? Could it have been A/C compressor going on/off? But it sounds like the engine had a "breathing" problem, resolved by the muffler delete. Which in turn goes back to maintenance history.
So now the idle is smooth?
When I was designing the intake for the supercharger on SHO R T S,
(https://www.v8sho.com/SHO/Eaton M90 On SHO Motor.htm)
I did a bunch of research on intake runners and discovered that 'pulse' modulation variances caused by a bunch of things like - wide/narrow runners. Long/short runners. Cylinder scavenging and valve overlap - can cause reverse reverberations to shock through an intake system and wreak all kinds of unexpected havoc on smooth airflow.
That said, if there was some condition in your mufflers which put the exhaust out of 'tune', it could have indeed resulted in a mild back pulse upsetting the smooth flow of air through your motor.
If it is idling smooth now. I guess I would leave well enough alone.
I would doubt any real 'restriction' in a muffler.Maybe catalyst chunk made it's way down? Not sure how else a muffler would be a restriction. If it worked it worked. Hopefully this is the end of your issue.