Before you solder on some RCAs, make sure that the output is low level, and not just a high level, speaker output. You could test it be measuring the output on the leads.
I'd also recommend staying away from sony. I've had problems with their amps, and all the newer stuff just looks plain ugly! A guy I know thats been into stereos since the 70s told me a good piece of advice, "Japan makes great electronics, but lousy speakers, Europe makes great speakers but questionable amps, and the US makes good speakers and decent amps" Its a general rule, and there definitely are exceptions, but for the most parts its pretty spot on.
I'd personally recommend looking into JL Audio VR or XR speakers for the fronts and maybe the TR or VR series for the rears. I have alpine amps and have never had a problem with them, kicker and JL amps are also highly recommended, but can be a little pricey. JL just recently came out with a more budget line of amps that are worth looking into. A JL 8W3v2 is a great sub and would probably work very well in the factory box.
I'd get that sub, the XR speakers, Alipine or Kicker amp, and an Alpine or Pioneer headunit if I was building a low profile, nice sounding system. It'd be a little pricey but sound really nice.